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Peer-Reviewed Journals

[45] J. Min, C. Vonesch, H.Kirshner, L. Carlini, N. Olivier, S. Holden, S. Manley, J.C. Ye, M. Unser, " FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data," Scientific Reports , Apr. 2014.

[44] X. Zong, J.Y. Lee, A. Poplawsky, S.G. Kim, J.C. Ye, " Compressed sensing fMRI using gradient-recalled echo and EPI sequences," NeuroImage , (Accepted), 2014

[43] K. Kim, K.S. Kim, H. Park, J.C. Ye, and Y.K. Park, " Real-time visualization of 3-D dynamic microscopic objects using optical diffraction tomography," Optics Express , Vol. 21, Issue 26, pp. 32269-32278, 2013

[42] O. Lee, and J. C. Ye " Joint sparsity-driven non-iterative simultaneous reconstruction of absorption and scattering in diffuse optical tomography," Optics Express , vol. 21, issue 22, pp. 26589-26604, Nov 2013

[41] J.M. Kim, and J.C. Ye " Corrections to "Compressive MUSIC: Revisiting the Link Between Compressive Sensing and Array Signal Processing", IEEE transactions on information theory, ( Sep. 2013)

[40] J.Y. Choi, D.G. Kang, S.H. Kang, Y.H. Sung, and J.C. Ye " A unified statistical framework for material decomposition using multienergy photon counting x-ray detectors", Medical Physics, (Accepted, July 2013)

[39] S.H.Tak, and J.C. Ye " Statistical analysis of fNIRS data: A comprehensive review", NeuroImage, (Accepted, June 2013)

[38] J. Min, J.D. Jang, D.M. Keum, S.W. Ryu, C.H. Choi, K.H. Jeong, and J.C. Ye " Fluorescent microscopy beyond diffraction limits using speckle illumination and joint support recovery", Scientific Reports, (Accepted, June 2013)

[37] K. S. Kim, Y. D. Son, Z. H. Cho, J. B. Ra and J. C. Ye, " Ultra-Fast Hybrid CPU-GPU Multiple Scatter Simulation for 3D PET", IEEE Journal of Biomedical and Health Informatics Vol.18, No.1, Jan 2014

[36] H. S. Park, J. K. Choi, K. R. Park, K. S. Kim, S. H. Lee, J. C. Ye and J. K. Seo, "Metal Artifact Reduction in CT by identifying missing data hidden in metals", Journal of X-ray Science and Technology (Accepted, May 2013)

[35] K. H. Jin, Y. Kim, S. H. Cho, J. C. Ye, and D. Yee " High-speed terahertz reflection three-dimensional imaging for nondestructive evaluation," Optics Express , vol. 20, issue 23, pp. 25432-25440, Oct 2012

[34] M. Yi, H. Kim, K. H. Jin, J. C. Ye, and J. Ahn "Terahertz substance imaging by waveform shaping", Optics Express , vol. 20, issue 18, pp. 20783-9, Aug 2012

[33] J. M. Kim, O. K. Lee, and J. C. Ye, "Improving Noise Robustness in Subspace-based Joint Sparse Recovery ", IEEE Trans. on Signal Processing, vol. 60, no. 11, pp. 5799-5809, Nov 2012.

[32] J. W. Jung, O. K. Lee, and J. C. Ye, "Source localization approach for functional DOT using MUSIC and FDR control", Optics Express , vol. 20, issue 6, pp. 6267-85 , Mar 2012

[31]S. Park, K. H. Jin, M. Yi, J. C. Ye, J. Ahn, and K. Jeong, "Enhancement of Terahertz Pulse Emission by Optical Nanoantenna", ACS Nano , vol.6 , no.3 , pp.2026-2031 , February 2012

[30] L. Hua, S. Tak, and J. C. Ye, "Lipschitz Killing Curvature Based Expected Euler Characteristics for p-Value Correction in fNIRS"", Journal of Neuroscience Methods , vol. 204 , pp. 61-67, February 2012.

[29] J. M. Kim, O. K. Lee, and J. C. Ye, "Compressive MUSIC: Revisiting the Link Between Compressive Sensing and Array Signal Processing", IEEE Trans. on Information Theory , vol. 58, no. 1, pp. 278 - 301, January 2012

[28] J. Choi, K. S. Kim, M. W. Kim, W. Seong, and J. C. Ye,"Sparsity Driven Metal Part Reconstruction for Artifact Removal in Dental CT",Journal of X-ray Science and Technology, vol. 19, pp. 457-475, October 2011.

[27] K. S. Kim and J. C. Ye, "Fully 3D iterative scatter-corrected OSEM for HRRT PET using GPU",Phys. Med. Biol., 56, 4991-5009. July 2011.

[26] O. Lee, J.M. Kim, Y. Bresler, and J. C. Ye, "Compressive diffuse optical tomography: non-iterative exact reconstruction using joint sparsity",IEEE Trans. Medical Imaging, vol. 30, no. 5, pp. 1129-1142, May 2011.

[25] K. Lee, S. Tak, and J. C. Ye, "A data-driven sparse GLM for fMRI analysis using sparse dictionary learning with MDL criterion", IEEE Trans. Medical Imaging, vol. 30, no. 5, pp. 1076-1089, May 2011.

[24]  L. Feng, R. Otazo, H. Jung, J. H. Jensen, J. C. Ye, D. K. Sodickson, D. Kim "Accelerated Cardiac T2 Mapping using Breath-hold Multi-Echo Fast Spin-Echo Pulse Sequence with k-t FOCUSS", Magn Reson Med   published online: 28 FEB 2011

[23] S. H. Tak, S. J. Yoon, J. Jang, K. S. Yoo, Y. Jeong, and J. C. Ye "Quantitative analysis of hemodynamic and metabolic changes in subcortical vascular dementia using simultaneous near-infrared spectroscopy and fMRI measurements", NeuroImage, vol 55, pp. 176-184, 2011

[22] H. Jung, and J. C. Ye, "Motion estimated and compensated compressed sensing dynamic magnetic resonance imaging: what we can learn from video compression techniques",International Journal of Imaging Systems and Technology . vol 20, pp. 81-98, 18 May 2010.  (invited paper)

[21] S. H. Tak, J. Jang, K. J. Lee, and J. C. Ye, "Quantification of CMRO2 without hypercapnia using simultaneous near-infrared spectroscopy and fMRI measurements", Phys. Med. Biol., vol. 55, pp. 3249-3269, May 2010.

[20] K. Lee, K. H. Jin, J. C. Ye, and J. Ahn, "Coherent optical computing for T-ray imaging", Optics Letters, vol. 35, pp. 508-510, February 2010.

[19]  J. Jang, C. Y. Bae, J. K. Park, and J. C. Ye, "Self-reference quantitative phase microscopy for microfluidic devices", Optics Letters, vol. 35, pp. 514-516, February 2010. ( Also selected for publication in the Virtual Journal for Biomedical Optics, vol. 5, iss. 5, March 2010 ) 

[18] H. Jung, J. S. Park, J. H. Yoo, and J. C. Ye, "Radial k-t FOCUSS for high-resolution cardiac cine magnetic resonance imaging", Magn Reson Med, vol. 63, pp. 68-78, January 2010.

[17] K. H. Jin, Y. C. Kim, D. S. Yee, O. K. Lee, and J. C. Ye, "Compressed sensing pulse-echo mode THz reflectance tomography",Optics Letters, vol. 34, pp. 3863-3865, December 2009.

[16] K. E. Jang, S. H. Tak, J. W. Jung, J. Jang, Y. Jeong, and J. C. Ye, "Wavelet-MDL detrending for near infrared spectroscopy (NIRS)", Journal of Biomedical Optics, vol. 14, no. 3, pp. 1-13, May/June 2009.

[15] H. Jung, K. H. Sung, K. S. Nayak, E. Y. Kim, and J. C. Ye, "k-t FOCUSS: a general compressed sensing framework for high resolution dynamic MRI",Magn Reson Med, vol. 61, pp. 103-116, January 2009.

[14] J. C. Ye, S. H. Tak, K. E. Jang, J. W. Jung, J. Jang, "NIRS-SPM: Statistical parametric mapping for near-infrared spectroscopy", NeuroImage, vol. 44, pp. 428-447, January 2009.

[13]  J. C. Ye, "Compressed sensing shape estimation for star-shape object in Fourier imaging",IEEE Signal Processing Letters, vol. 14, pp. 750-753, October 2007.

[12] H. Jung, J. C. Ye, and E. Y. Kim, "Improved k-t BLAST and k-t SENSE using FOCUSS", Physics in Medicine and Biology, vol. 52, pp. 3201-3226, June 2007.

[11]  K. E. Jang and J. C. Ye, "Single channel blind image deconvolution from radially symmetric blur kernels",Opt. Express, vol. 15, pp. 3791-3803, April 2007.

[10] J. C. Ye, S. H. Tak, Y. J. Han, and H. W. Park, "Projection Reconstruction MR Imaging using FOCUSS",Magn Reson Med, vol. 57, pp. 764-775, April 2007.

[9] J. C. Ye, P. Moulin, and Y. Bresler, "Asymptotic global confidence region for 3-D parametric shape estimation in inverse problems", IEEE Trans. on Image Processing, vol. 15, pp. 2904-2919, November 2006.

[8] J. C. Ye, Y. Bresler, and P. Moulin, "Cramer-Rao bounds for parametric shape estimation in inverse problems", IEEE Trans. on Image Processing , vol. 12, pp.71-84, January 2003.

[7] J. C. Ye, Y. Bresler, and P. Moulin, "A self-referencing level-set method for image reconstruction from sparse Fourier samples", International Journal of Computer Vision, vol. 50, pp. 253-270, December 2002.

[6] J. C. Ye, C. A. Bouman, R. P. Millane, and K. J. Webb, "Nonlinear multigrid algorithms for Bayesian optical diffusion tomography", IEEE Trans. on Image Processing, vol. 10, pp. 909-922, June 2001.

[5]  J. C. Ye, Y. Bresler, and P. Moulin, "Cramer-Rao bounds for parametric boundaries of targets in inverse scattering problems",IEEE Trans. on Antennas and Propagat., vol. 49, May 2001.

[4] J. C. Ye, Y. Bresler, and P. Moulin, "Asymptotic global confidence regions in parametric shape estimation problems", IEEE Trans. on Information Theory, vol. 46, pp. 1881-1895, August 2000.

[3] J. C. Ye, K. J. Webb, C. A. Bouman, and R. P. Millane, "Optical diffusion tomography using iterative coordinate descent optimization in a Bayesian framework",J. Opt. Soc. Am. A., vol. 16, pp. 2400-2412, October 1999.

[2]  J. C. Ye, K. J. Webb, R. P. Millane, and T. J. Downar, "Modified distorted Born iterative method with an approximate Frechet derivative for optical diffusion tomography", J. Opt. Soc. Am. A., vol. 16, pp.1814-1826 , July 1999.

[1] J. C. Ye, R. P.Millane, K. J. Webb, and T. J. Downar, "Importance of the grad(D) term in frequency-resolved optical diffusion imaging",Optics Letters, vol. 23, pp. 1423-1425, September 1998.